PyData Amsterdam 2025

Potato breeding using image analysis in a production setting
2025-09-25 , Voyager

The scale-up company Solynta focuses on hybrid potato breeding, which helps achieve improvements in yield, disease resistance, and climate adaptation. Scientific innovation is part of our core business. Plant selections are highly data-driven, involving, for example, drone observations and genetic data. Minimal time-to-production for new ideas is essential, which is facilitated by our custom AWS devops platform. This platform focusses on automation and accessible data storage.

In this talk, we introduce how computer vision (YOLO and SAM modelling) enables monitoring traits of plants in the field, and how we operate these models. This further entails:
• Our experience from training and evaluating models on drone images
• Trade-offs selecting AWS services, Terraform modules and Python packages for automation and robustness
• Our team setup that allows IT specialists and biologists to work together effectively

The talk will provide practical insights for both data scientists and DevOps engineers. The main takeaways are that object detection and segmentation from drone maps, at scale, are achievable for a small team. Furthermore, with the right approach, you can standardise a DevOps platform to let operations and developers work together.


Outline (30 min):
• Introduction to hybrid potato breeding (3 min)
• Challenges/solutions in breeding (5 min)
• YOLO and SAM modelling using drone data (10 min)
• Working together on a DevOps platform (10 min)
• Summary (2 min)

As a physicist, I enjoy solving real-world problems. My analytical approach is based on years of experience in modelling, programming and cloud development. I want to find durable and smart solutions, so that companies stay competitive and at the same time contribute to society. To establish new data driven solutions that work, I employ DevOps practices. This implies writing production-ready code, focusing on frequent releases, and creating a learning culture within the team.

Rik Nuijten is a Data Scientist at Solynta (a hybrid potato breeding company). His expertise lies in geospatial analysis, with a focus on data collected from drones. At his current company they are constantly learning about the new potato plants they create. Rik enjoys developing workflows to capture plant information using sensor data, specifically when it is otherwise difficult to observe through field surveys. He finds the biggest challenges in finding areas where such workflows add most value for the company and in finding ways to keep data collection protocols and analysis simple. Rik holds a PhD in Forestry and Remote Sensing from the University of British Columbia. Outside of work, Rik enjoys all sports that do not require good hand-eye coordination, including biking, hiking, and bouldering as well as a nice cinnamon bun afterward.